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Pulsar.h void bscrunch(Container *, const ScrunchFactor &) Integrate phase bins. Definition: ScrunchFactor.h:116 void fit(const Pulsar::Parameters *model, std::vector< toa > &data, Pulsar::Parameters *postfit=NULL, bool track=false, Tempo::toa::State min_state=Tempo::toa::Normal) Pulsar bool range_checking_enabled Container classes should check array indeces at the cost of performance. Definition: Pulsar.C:10 Smooth * get_smooth() const Get the smoothing function. Definition: BaselineWindow.C:77 bool as_Estimate Output values using Estimate operator <<. Definition: General/Pulsar/SimPolnTiming.h:127 float get_snr(const Profile *profile) Return the signal to noise ratio based on the shift. Definition: StandardSNR.C:17 void set_choose_maximum_harmonic(bool flag=true) Allow software to choose the maximum harmonic. Definition: MatrixTemplateMatching.C:35 virtual double get_centre_frequency(unsigned ichan) const Get the centre frequency of the specified channel. Definition: CalibratorExtension.C:101 void covariance(Scalar *function, unsigned index, std::vector< unsigned > &imap, std::vector< std::vector< double > > &covar) void phase(Profile *input) Compute the phase of the input complex-valued Profile. Definition: Fourier.C:135 void extrapolate_benefit(unsigned steps) Account for noise in the standard profile. Definition: SimPolnTiming.C:410 Range boost_vector Number of steps when varying the parallactic angle. Definition: General/Pulsar/SimPolnTiming.h:115 Estimates phase shift in Fourier domain using matrix template matching. Definition: MatrixTemplateMatching.h:26 void convert_state(Signal::State state) Convert data to the specified state. Definition: Archive_convert_state.C:14 virtual void add_script(const std::string &job) Load a script into the jobs. Definition: StandardOptions.C:39 virtual void resize(unsigned nsubint, unsigned npol=0, unsigned nchan=0, unsigned nbin=0) Resize the Integration vector with new_Integration instances. Definition: Archive_resize.C:26 Range width Number of steps when varying the Gaussian width. Definition: General/Pulsar/SimPolnTiming.h:103 Plots images of something as a function of pulse phase vs something. Definition: PhaseVsTime.h:26 void offset(double offset) offsets each bin of the profile by offset Definition: Profile.C:301 static ProfileWeightFunction * factory(const std::string &name_and_parse) Construct a new ProfileWeightFunction from a string. Definition: ProfileWeightFunction.C:79 void remove_baseline() Remove the baseline from all profiles. Definition: Archive_remove_baseline.C:17 void tscrunch(Container *, const ScrunchFactor &) Integrate sub-integrations. Definition: ScrunchFactor.h:109 Expert * expert() Provide access to the expert interface. Definition: Integration.C:162 void set_baseline_extent(float width) Set the fractional number of high frequencies used to calculate noise. Definition: FourierSNR.C:21 Simulates a simple Gaussian with a standard RVM and zero circular. Definition: SimplePolnProfile.h:26 const float * get_amps() const Return a pointer to the amplitudes array. Definition: ProfileAmps.C:141 Range parallactic Number of steps when varying the parallactic angle. Definition: General/Pulsar/SimPolnTiming.h:111 float rvm_beta Difference between magnetic axis and line of sight. Definition: General/Pulsar/SimPolnTiming.h:81 void set_orientation(unsigned ireceptor, const Estimate< double > &theta) Set the orientation, , of the specified receptor (radians) Definition: Feed.C:165 static ShiftEstimator * factory(const std::string &name_and_parse) Construct a new ShiftEstimator from a string. Definition: ShiftEstimator.C:26 virtual void set_help_footer(const std::string &s) bool choose_maximum_harmonic Set true when set_standard should choose the maximum harmonic. Definition: PolnProfileFit.h:162 void set_noise(float) Set the standard deviation of the noise. Definition: SyntheticPolnProfile.C:55 static bool verbose flag controls the amount output to stderr by Integration methods Definition: Integration.h:42 const ScalarMath atan(const ScalarMath &x) double obsfreq Observed Frequency. Definition: FITSHdrExtension.h:223 double get_centre_frequency(unsigned ichan) const Get the Profile centre frequency attribute of the given channel. Definition: Integration.C:359 virtual Interpreter * get_interpreter() Provide access to the interpreter. Definition: StandardOptions.C:79 virtual void configure(const std::string &) Process a configuration command. Definition: Plot.C:29 void transform(const Jones< float > &response) Perform the congruence transformation on each polarimetric profile. Definition: IntegrationExpert.h:110 void add_coordinate(double x, const Estimate< T, U > &d) bool allow_infinite_frequency allow dedispersion or Faraday rotation correction to infinite frequency Definition: Interpreter.h:230 virtual unsigned get_nsubint() const =0 Get the number of sub-integrations stored in the file. static SNRatioEstimator * factory(const std::string &name_and_parse) Construct a new SNRatioEstimator from a string. Definition: SNRatioEstimator.C:22 const ScalarMath log(const ScalarMath &x) std::ostream * output Output stream. Definition: General/Pulsar/SimPolnTiming.h:130 Profile smoothing (more accurately denoising) that uses a thresholded wavelet transform. Definition: WaveletSmooth.h:26 float snr() const Returns the signal to noise ratio of the profile. Definition: Profile_snr.C:15 virtual unsigned get_nchan() const Get the number of frequency channels. Definition: CalibratorExtension.C:83 Estimate< T, U > get_slope() const float standard_noise Relative noise in standard profile. Definition: General/Pulsar/SimPolnTiming.h:78 Plots off-pulse mean or variance as a func of time and freq. Definition: DynamicBaselineSpectrumPlot.h:23 double sumsq(int bin_start=0, int bin_end=0) const Returns the sum of all amplitudes squared. Definition: Profile.C:722 static Archive * load(const std::string &name) Factory returns a new instance loaded from filename. Definition: Archive_load.C:28 void set_reference_frequency(double MHz) Set the reference frequency in MHz. Definition: ColdPlasma.h:203 Stokes static void set_verbosity(unsigned level) Set the verbosity level (0 to 3) Definition: Archive_verbose.C:19 unsigned get_nbin() const Return the number of bins. Definition: ProfileAmps.h:50 void just_do_it(Archive *) Just do the correction (off the books) Definition: ColdPlasma.h:194 void scale(double scale) multiplies each bin of the profile by scale Definition: Profile.C:311 float offset Phase offset of simulated observations. Definition: General/Pulsar/SimPolnTiming.h:93 static bool verbose flag controls the amount output to stderr by Profile methods Definition: Profile.h:53 Reference::To< ScalarParameter > magnetic_axis const ScalarMath sqrt(const ScalarMath &x) void set_swims(float) Set the peak standard deviation of the simulated SWIMS/jitter noise. Definition: SyntheticPolnProfile.C:65 Stores the Stokes parameters of the reference source. Definition: CalibratorStokes.h:28 const Profile * new_Profile(const PolnProfile *data, char code) Return a possibly newly constructed Profile with state specified by code. Definition: Polarization.C:35 Type * get() const unsigned iterations Number of simulated observations for each step in simulation. Definition: General/Pulsar/SimPolnTiming.h:87 void fscrunch(Container *, const ScrunchFactor &) Integrate frequency channels. Definition: ScrunchFactor.h:102 virtual void add_job(const std::string &job) Add to the jobs. Definition: StandardOptions.C:34 static Archive * new_Archive(const std::string &class_name) Factory returns a null-constructed instance of the named class. Definition: Archive.C:104 virtual unsigned get_nchan() const =0 Get the number of frequency channels used. virtual void set_poln_calibrated(bool done=true)=0 Set the value to be returned by get_poln_calibrated. void set_threshold(float sigma) Set the threshold below which samples are included in the baseline. Definition: GaussianBaseline.C:39 virtual Profile * clone() const returns a pointer to a new copy of self Definition: Profile.C:124 Calculates the signal-to-noise ratio using a ProfileWeightFunction. Definition: AdaptiveSNR.h:26 void set_centre(double) Set the phase of the standard profile centre. Definition: SimPolnTiming.C:151 void set_standard(Archive *) Set the archive to be used as a standard. Definition: SimPolnTiming.C:158 Simulated polarimetric pulse profile. Definition: General/Pulsar/SyntheticPolnProfile.h:28 virtual void set_dispersion_measure(double dm)=0 Set the dispersion measure (in ) Remove a variable baseline from each profile. Definition: RemoveVariableBaseline.h:29 Reference::To< ScalarParameter > line_of_sight bool vary_line_of_sight Vary the line of sight. Definition: General/Pulsar/SimPolnTiming.h:96 virtual double get_centre_frequency() const =0 Get the centre frequency of the observation. Intensity Integration * get_Integration(unsigned subint) Return pointer to the specified Integration. Definition: IntegrationManager.C:41 static Functor< void(Archive *) > remove_baseline_strategy The default baseline removal strategy. Definition: Archive.h:572 Definition: MoreProfiles.h:24 void set_height(double height) Calculates the signal-to-noise ratio in the Fourier domain. Definition: FourierSNR.h:26 Array of Profiles integrated over the same time interval. Definition: Integration.h:37 Adaptively computes the baseline, assuming normally distributed noise. Definition: GaussianBaseline.h:70 static Option< bool > rotate_in_phase_domain When true, Profile::rotate shifts bins in the phase domain. Definition: Profile.h:56 float measurement_noise Relative noise in simulated observations. Definition: General/Pulsar/SimPolnTiming.h:90 void set_model(MEAL::RotatingVectorModel *model) Set the model to be interfaced. Definition: RotatingVectorModelOptions.h:41 float max(int bin_start=0, int bin_end=0) const Returns the maximum amplitude. Definition: Profile.C:651 Profile * get_Profile(unsigned subint, unsigned pol, unsigned chan) Return pointer to the specified profile. Definition: Archive.C:270 void set_turns(float) Set the width of the smoothing window in turns. Definition: Smooth.C:23 Find the baseline from the total integrated total intensity profile. Definition: RemoveBaseline.h:70 MJD end_time() const Return the MJD at the end of the last sub-integration. Definition: Archive.C:308 RotatingVectorModel command line options. Definition: RotatingVectorModelOptions.h:25 MEAL::Gaussian gaussian The gaussian total intensity profile. Definition: General/Pulsar/SimPolnTiming.h:66 void set_measure(double measure) Set the correction measure. Definition: ColdPlasma.h:227 Finds the phase window in which the smoothed Profile is an extremum. Definition: BaselineWindow.h:28 virtual void add(Item *) Coherence MJD start_time() const Return the MJD at the start of the first sub-integration. Definition: Archive.C:299 std::string get_help_footer() const void set_ellipticity(unsigned ireceptor, const Estimate< double > &chi) Set the ellipticity, , of the specified receptor in radians. Definition: Feed.C:149 virtual double get_bandwidth() const =0 Get the overall bandwidth of the observation. void set_maximum_harmonic(unsigned max) Set the maximum number of harmonics to include in fit. Definition: PolnProfileFit.C:115 type virtual void get_weight(PhaseWeight *weight) Returns a PhaseWeight with the Profile attribute set. Definition: ProfileWeightFunction.C:26 virtual void set_Profile(const Profile *) Set the Profile from which the PhaseWeight will be derived. Definition: ProfileWeightFunction.C:20 Simulates full-Stokes arrival time estimation. Definition: General/Pulsar/SimPolnTiming.h:49 MEAL::RotatingVectorModel rvm The rotating vector model used to describe the position angle. Definition: General/Pulsar/SimPolnTiming.h:69 static Option< float > default_duty_cycle fractional phase window used in most functions Definition: Profile.h:62 Stores Calibrator parameters in an Archive. Definition: CalibratorExtension.h:27 Calculates profile shifts by fitting to a template/standard. Definition: ProfileShiftFit.h:48 virtual void set_very_verbose() Operate in very verbose mode. Definition: Application.C:74 void set_standard(const Profile *profile) Set the standard against which the S/N will be calculated. Definition: StandardSNR.C:11 void transform(Archive *) Remove the baseline. Definition: RemoveBaseline.C:31 Models a pulse profile using multiple components. Definition: ComponentModel.h:34 virtual void plot(const Archive *) Plot in the current viewport. Definition: SimplePlot.C:15 std::string get_filename() const Get the name of the file to which the archive will be unloaded. Definition: Archive.h:108 static unsigned verbose A verbosity flag that can be set for debugging purposes. Definition: IntegrationManager.h:38 Range slope Number of steps when varying the RVM orientation. Definition: General/Pulsar/SimPolnTiming.h:99 void set_baseline(float) The the off-pulse baseline mean. Definition: SyntheticPolnProfile.C:71 void stats(double *mean, double *variance=0, double *varmean=0, int bin_start=0, int bin_end=0) const Calculates the mean, variance, and variance of the mean. Definition: Profile_stats.C:27 Plots images of something as a function of pulse phase vs something. Definition: PhaseVsFrequency.h:26 Jansky void fscrunch(unsigned nscrunch=0) Integrate profiles in frequency. Definition: Archive_fscrunch.C:17 const std::string get_message() const State pscrunch(State state) Profile smoothing algorithms that automatically pick smoothing size based on profile SNR. Definition: AdaptiveSmooth.h:25 void set_prefix_name(bool flag) virtual std::string help(bool show_default_values=false, bool show_header=false, const char *indent=0) const Profile * get_Profile(const Archive *data, Index subint, Index pol, Index chan) Return the requested profile, cloning and integrating when needed. Definition: Index.C:24 void set_degree(MEAL::Univariate< MEAL::Scalar > *) Set the functional form of the degree of polarization. Definition: SyntheticPolnProfile.C:39 virtual void set_faraday_corrected(bool done=true)=0 Set the value to be returned by get_ism_rm_corrected. const ExtensionType * get() const Template method searches for an Extension of the specified type. void pscrunch() Integrate profiles in polarization. Definition: Archive_pscrunch.C:16 void unload(const char *filename=0) const Write the archive to filename. Definition: Archive_unload.C:36 void boost_around() Find the phase shift due to boosts of varying orientation. Definition: SimPolnTiming.C:340 const PolnProfile * new_Stokes(const Archive *, unsigned sub, unsigned chan) Return a newly constructed PolnProfile with state == Stokes. Definition: Polarization.C:15 Profile * get_Profile(unsigned ipol, unsigned ichan) Returns a pointer to the Profile given by the specified indeces. Definition: Integration.C:306 PolnProfileFit fit The arrival time estimation algorithm. Definition: General/Pulsar/SimPolnTiming.h:63 virtual void set_rotation_measure(double rm)=0 Set the rotation measure (in ) void transform(Archive *) Remove the baseline. Definition: RemoveVariableBaseline.C:62 void set_width(double width) virtual unsigned get_nbin() const =0 Get the number of pulsar phase bins used. Calculates the signal-to-noise ratio by fitting against a standard. Definition: StandardSNR.h:27 void run_simulation() Run the simulation, outputting results to cout. Definition: SimPolnTiming.C:182 void susceptibility() Account for noise in the standard profile. Definition: SimPolnTiming.C:278 unsigned nbin Number of bins in pulse profile. Definition: General/Pulsar/SimPolnTiming.h:72 void add_options(CommandLine::Menu &) Add options to the menu. Definition: RotatingVectorModelOptions.C:24 std::string title Title written over plot. Definition: General/Pulsar/SimPolnTiming.h:124 void uniform_weight(float new_weight=1.0) Set the weight of each profile to the given number. Definition: Integration.C:706 Range dgain Number of steps when varying the differental gain. Definition: General/Pulsar/SimPolnTiming.h:107 void set_width(double width) void set_baseline_estimator(ProfileWeightFunction *function) Set the function used to compute the baseline. Definition: AdaptiveSNR.C:29 int find_max_bin(int bin_start=0, int bin_end=0) const Returns the bin number with the maximum amplitude. Definition: Profile.C:622 virtual Profile * get_Profile(unsigned i) get the ith Profile Definition: MoreProfiles.C:57 virtual void set_state(Signal::State state)=0 Set the state of the profile data. virtual unsigned get_size() const get the size of the profile vector Definition: MoreProfiles.C:44 SyntheticPolnProfile generate The synthetic polarimetric profile generator. Definition: General/Pulsar/SimPolnTiming.h:60 Generated using doxygen 1.8.17
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