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pdv_KtZ_Archive.h Jones< double > evaluate(std::vector< Jones< double > > *grad=0) const const ScalarMath exp(const ScalarMath &x) void fit(const Pulsar::Parameters *model, std::vector< toa > &data, Pulsar::Parameters *postfit=NULL, bool track=false, Tempo::toa::State min_state=Tempo::toa::Normal) Pulsar void set_bybin(bool t) Run the algorithm on the spectra of each bin. Definition: ChannelZapMedian.h:77 double get_param(unsigned) const Get the value of the specified model parameter. Definition: PolnCalibratorExtension.C:285 float get_snr(const Profile *profile) Return the signal to noise ratio based on the shift. Definition: StandardSNR.C:17 virtual double get_centre_frequency(unsigned ichan) const Get the centre frequency of the specified channel. Definition: CalibratorExtension.C:101 PPQQ This class registers the pdv_KtZ_Archive plugin class for use. Definition: pdv_KtZ_Archive.h:73 van Straten (2004; ApJSS 152:129), equation 18 Definition: CalibratorTypes.h:155 void covariance(Scalar *function, unsigned index, std::vector< unsigned > &imap, std::vector< std::vector< double > > &covar) void phase(Profile *input) Compute the phase of the input complex-valued Profile. Definition: Fourier.C:135 static bool no_amps When true, no memory is allocated for amps. Definition: ProfileAmps.h:38 double mean(float phase, float duty_cycle=default_duty_cycle) const Convenience interface to stats, returns only the mean. Definition: Profile_stats.C:121 void convert_state(Signal::State state) Convert data to the specified state. Definition: Archive_convert_state.C:14 virtual void resize(unsigned nsubint, unsigned npol=0, unsigned nchan=0, unsigned nbin=0) Resize the Integration vector with new_Integration instances. Definition: Archive_resize.C:26 static bool verbose Verbosity flag. Definition: CalibratorPlotter.h:35 Plots images of something as a function of pulse phase vs something. Definition: PhaseVsTime.h:26 void remove_baseline() Remove the baseline from all profiles. Definition: Archive_remove_baseline.C:17 virtual TextInterface::Parser * get_interface()=0 Get the text interface to the configuration attributes. float min(int bin_start=0, int bin_end=0) const Returns the minimum amplitude. Definition: Profile.C:665 const float * get_amps() const Return a pointer to the amplitudes array. Definition: ProfileAmps.C:141 Transformation * get_transformation(unsigned c) Get the transformation for the specified frequency channel. Definition: PolnCalibratorExtension.C:157 std::string get_name() Return the name of the TimerArchive plugin. Definition: pdv_KtZ_Archive.h:83 float get_weight() const get the weight of the profile Definition: Profile.h:207 unsigned get_nparam() const Unloads Pulsar::SystemCalibrator solution to file. Definition: SystemCalibratorUnloader.h:24 char * getDMS(char *str, int places=3) const virtual void set_filename(const std::string &) Set the filename of the result. Definition: SystemCalibratorUnloader.C:29 Argument * find(const std::string &name) double get_centre_frequency(unsigned ichan) const Get the Profile centre frequency attribute of the given channel. Definition: Integration.C:359 const Integration * get_Integration(const Archive *data, Index subint) Return the requested profile, cloning and integrating when needed. Definition: Index.C:118 PolnCalibrator with estimated calibrator Stokes parameters. Definition: SystemCalibrator.h:43 bool allow_infinite_frequency allow dedispersion or Faraday rotation correction to infinite frequency Definition: Interpreter.h:230 virtual unsigned get_nsubint() const =0 Get the number of sub-integrations stored in the file. Calculates the signal-to-noise ratio by fitting against a standard. Definition: FortranSNR.h:27 void set_amps(const T *data) set the amplitudes array equal to the contents of the data array Definition: ProfileAmps.h:89 MJD epoch The epoch of the observation. Definition: pdv_KtZ_Archive.h:94 float find_min_phase(float duty_cycle=default_duty_cycle) const Returns the phase of the centre of the region with minimum mean. Definition: Profile_find_minmax_phase.C:21 void counter_drift(Archive *archive, double trial_p, double trial_pdot=0.0, MJD reference_time=MJD::zero) Rotates subints to counter a drifting pulse due to incorrect P/Pdot. Definition: counter_drift.C:17 pdv_KtZ_Archive * clone() const Return a new copy-constructed pdv_KtZ_Archive instance. Definition: pdv_KtZ_Archive.C:80 const ScalarMath sin(const ScalarMath &x) void set_value(const std::string &name, const std::string &value) virtual unsigned get_nchan() const Get the number of frequency channels. Definition: CalibratorExtension.C:83 PlotScale * get_y_scale(bool allow_transpose) Get the x-scale. Definition: PlotFrame.C:213 const pdv_KtZ_Archive & operator=(const pdv_KtZ_Archive &archive) Assignment operator. State static Archive * load(const std::string &name) Factory returns a new instance loaded from filename. Definition: Archive_load.C:28 Plots the various components of a ReceptionCalibrator. Definition: ReceptionCalibratorPlotter.h:26 Contains information about the receiver and receiver platform. Definition: Receiver.h:28 unsigned npanel Number of panels (vertical) Definition: CalibratorPlotter.h:60 Stokes static void set_verbosity(unsigned level) Set the verbosity level (0 to 3) Definition: Archive_verbose.C:19 char code(const std::string &telescope_name) T val unsigned get_nbin() const Return the number of bins. Definition: ProfileAmps.h:50 virtual Integration * load_Integration(const char *filename, unsigned subint) Load the specified Integration from filename, returning new instance. Definition: pdv_KtZ_Archive.C:365 Stores Parkes Wideband Correlator parameters. Definition: WidebandCorrelator.h:27 const ScalarMath pow(const ScalarMath &x, const ScalarMath &y) pdv_KtZ_Archive() Default constructor. Definition: pdv_KtZ_Archive.C:29 double get_variance(unsigned) const Get the variance of the specified model parameter. Definition: PolnCalibratorExtension.C:297 virtual void load_header(const char *filename) Load the pdv_KtZ_ header information from filename. Definition: pdv_KtZ_Archive.C:154 const ScalarMath sqrt(const ScalarMath &x) Stores the Stokes parameters of the reference source. Definition: CalibratorStokes.h:28 Type * get() const Solve the measurement equation using GNU Scientific Library. Definition: ReceptionModelSolveGSL.h:24 const ScalarMath abs(const ScalarMath &x) U var void fscrunch(Container *, const ScrunchFactor &) Integrate frequency channels. Definition: ScrunchFactor.h:102 Solve the measurement equation by non-linear least squares minimization. Definition: ReceptionModelSolver.h:26 virtual unsigned get_nchan() const =0 Get the number of frequency channels used. std::vector< Reference::To< const Profile > > profiles the vector of profiles to be drawn Definition: ProfileVectorPlotter.h:47 void shift(unsigned npts, float *arr, double shift) virtual Signal::State get_state() const =0 Get the state of the profile data. void cal_levels(std::vector< std::vector< Estimate< double > > > &hi, std::vector< std::vector< Estimate< double > > > &lo) const Returns the mean hi/lo and variance of the mean hi/lo of every profile. Definition: Integration_cal_levels.C:16 void set_Estimate(unsigned index, const Estimate< double > ¶m) double get_rotation_measure() const Get the auxiliary rotation measure. Definition: AuxColdPlasmaMeasures.C:41 ~pdv_KtZ_Archive() Destructor. Definition: pdv_KtZ_Archive.C:34 float get_weight(unsigned ichan) const Get the Profile weight attribute of the given channel. Definition: Integration.C:388 void set_paz_report(bool t) Print equivalent paz command on cout. Definition: ChannelZapMedian.h:83 virtual void set_dispersion_measure(double dm)=0 Set the dispersion measure (in ) virtual void unload(SystemCalibrator *) Unload the SystemCalibrator solution using the current settings. Definition: SystemCalibratorUnloader.C:50 virtual void set_dedispersed(bool done=true)=0 Set the value to be returned by get_dedispersed. Remove a variable baseline from each profile. Definition: RemoveVariableBaseline.h:29 International Terrestrial Reference Frame Extension. Definition: ITRFExtension.h:27 Intensity Integration * get_Integration(unsigned subint) Return pointer to the specified Integration. Definition: IntegrationManager.C:41 static Functor< void(Archive *) > remove_baseline_strategy The default baseline removal strategy. Definition: Archive.h:572 void set_projection_corrected(bool val) Set true when receptor projection onto sky has been corrected. Definition: Receiver.h:172 float find_max_phase(float duty_cycle=default_duty_cycle) const Returns the phase of the centre of the region with maximum mean. Definition: Profile_find_minmax_phase.C:43 unsigned get_nparam_infit() const Communicates CalibratorStokes parameters to plotting routines. Definition: CalibratorStokesInfo.h:26 std::string name() const Implements Measurement Equation Modeling (van Straten 2004) Definition: ReceptionCalibrator.h:42 static size_t get_instance_count() Array of Profiles integrated over the same time interval. Definition: Integration.h:37 static bool verbose Instrumental gain, differential gain, and differential phase. Definition: SingleAxis.h:38 static bool very_verbose void set_name(Name name) Set the colour map name. Definition: ColourMap.C:42 float max(int bin_start=0, int bin_end=0) const Returns the maximum amplitude. Definition: Profile.C:651 char * getHMS(char *str, int places=3) const FluxCalOn Profile * get_Profile(unsigned subint, unsigned pol, unsigned chan) Return pointer to the specified profile. Definition: Archive.C:270 static Type * factory(const std::string &name) Construct a new instance of Calibrator::Type, based on name. Definition: CalibratorType.C:12 PolnCal virtual void add_precondition(Functor< bool(Profile *, PhaseWeight *) >) One or more preconditions can be added. Definition: Mower.C:75 Find the baseline from each total intensity profile. Definition: RemoveBaseline.h:85 Stores PolnCalibrator parameters in an Archive instance. Definition: PolnCalibratorExtension.h:28 Reference::To< StaticEntry > entry The parameters to match. Definition: Database.h:220 const ProfileVectorPlotter * get_plotter() const Provide limited access to the plotter. Definition: FluxPlot.h:125 PlotScale * get_x_scale(bool allow_transpose) Get the x-scale. Definition: PlotFrame.C:189 Implements Measurement Equation Template Matching (van Straten 2013) Definition: PulsarCalibrator.h:43 void set_weight(unsigned ichan, float weight) Set the Profile weight attributes of the given channel. Definition: Integration.C:401 MEAL::Complex2 * load_transformation(const std::string &filename) Load a new transformation instance from file. Definition: CalibratorType_factory.C:94 virtual void add(Item *) Coherence Phenomenological description of the instrument. Definition: ManualPolnCalibrator.h:27 T get_value() const virtual MJD get_epoch() const Get the reference epoch of the calibration experiment. Definition: CalibratorExtension.C:58 virtual void get_xyz(double &x, double &y, double &z) const=0 double integration_length The integration length. Definition: pdv_KtZ_Archive.h:91 Definition: CalibratorType.h:30 virtual double get_bandwidth() const =0 Get the overall bandwidth of the observation. T get(const std::string &keyword) const virtual void set_program(const std::string &) Set the name of the program; enables verbosity. Definition: SystemCalibratorUnloader.C:24 type double get_bandwidth() const Get the bandwidth (in MHz) Definition: Integration.C:445 bool get_valid() const Get the model validity flag. Definition: PolnCalibratorExtension.C:321 void set_window_size(unsigned size) Set the size of the window over which median will be computed. Definition: ChannelZapMedian.h:53 virtual PlotFrame * get_frame() Get the frame. Definition: FramedPlot.C:27 std::string get_description() Return description of this plugin. Definition: pdv_KtZ_Archive.C:377 void unload_file(const char *filename) const Unload the pdv_KtZ_Archive (header and Integration data) to filename. Definition: pdv_KtZ_Archive.C:371 double get_scale(size_t nfft, type t) void set_standard(const Profile *profile) Set the standard against which the S/N will be calculated. Definition: StandardSNR.C:11 Convenience interface to a bunch of regularly used colour maps. Definition: ColourMap.h:26 float get_snr(const Profile *profile) Return the signal to noise ratio based on the shift. Definition: FortranSNR.C:40 const ScalarMath cos(const ScalarMath &x) bool advocate(const char *filename) Advocate the use of TimerArchive to interpret filename. Definition: pdv_KtZ_Archive.C:383 void dedisperse() Rotate the Profiles to remove dispersion delays b/w chans. Definition: Archive_dedisperse.C:18 Plot * construct(std::string name) Return a new instance of the named plot. Definition: PlotFactory.C:169 Plots the various components of a SystemCalibrator. Definition: SystemCalibratorPlotter.h:27 Plots images of something as a function of pulse phase vs something. Definition: PhaseVsFrequency.h:26 virtual void set_extension(const std::string &) Set the extension used when creating a filename. Definition: SystemCalibratorUnloader.C:34 virtual void set_archive_class(const std::string &) Copy constructor. Definition: SystemCalibratorUnloader.C:19 PhaseWeight * baseline() const Return a new PhaseWeight instance with the baseline phase bins masked. Definition: Profile_baseline.C:15 Adapts a VariableTransformation to a ManualPolnCalibrator. Definition: ManualVariableTransformation.h:23 Jansky virtual Archive * clone() const =0 Return a new copy constructed instance equal to this. float get_chisq() const void fscrunch(unsigned nscrunch=0) Integrate profiles in frequency. Definition: Archive_fscrunch.C:17 const std::string get_message() const double get_dispersion_measure() const Get the auxiliary dispersion measure. Definition: AuxColdPlasmaMeasures.C:29 virtual void plot(const Calibrator *calibrator) Plot the Pulsar::Calibrator. Definition: CalibratorPlotter.C:37 void transform(Integration *) Set the Profile from which baseline PhaseWeight will be computed. Definition: Mower.C:150 Uses a median smoothed spectrum to find birdies and zap them. Definition: ChannelZapMedian.h:28 Physical parameterization of the instrumental response. Definition: VariableBackend.h:35 virtual void remove(Item *) Estimate< double > get_total(bool subtract_baseline=true) const Returns the total flux of the on-pulse phase bins. Definition: ProfileStats.C:251 static bool trust_pointing_feed_angle Always trust the feed angle stored in the Pointing extension. Definition: ProjectionCorrection.h:37 void pscrunch() Integrate profiles in polarization. Definition: Archive_pscrunch.C:16 Stores parameters used to correct auxiliary dispersion and birefringence. Definition: AuxColdPlasmaMeasures.h:24 void copy(const Archive &archive) Copy all of the class attributes and the selected Integration data. Definition: pdv_KtZ_Archive.C:57 virtual TextInterface::Parser * get_frame_interface()=0 Get the text interface to the frame attributes. virtual double get_dispersion_measure() const =0 Get the dispersion measure (in ) bool can_unload() const The unload_file method is implemented. Definition: pdv_KtZ_Archive.h:65 virtual void set_weight(float) set the weight of the profile Definition: Profile.C:185 Profile * get_Profile(unsigned ipol, unsigned ichan) Returns a pointer to the Profile given by the specified indeces. Definition: Integration.C:306 void transform(Archive *) Remove the baseline. Definition: RemoveVariableBaseline.C:62 virtual unsigned get_nbin() const =0 Get the number of pulsar phase bins used. Calculates the signal-to-noise ratio by fitting against a standard. Definition: StandardSNR.h:27 Solve the measurement equation by non-linear least squares minimization. Definition: ReceptionModelSolveMEAL.h:24 static bool trust_pointing_para_angle Trust Pointing parallactic angle more than computed value. Definition: ProjectionCorrection.h:34 void set_profile(const Profile *) Set the Profile from which statistics will be derived. Definition: ProfileStats.C:115 PolnProfile * new_PolnProfile(unsigned ichan) Returns a pointer to a new PolnProfile instance. Definition: Integration_new_PolnProfile.C:16 void uniform_weight(float new_weight=1.0) Set the weight of each profile to the given number. Definition: Integration.C:706 Estimate< double > get_Estimate(unsigned index) const virtual void resize(unsigned nbin) resize the data area Definition: Profile.C:134 bool has_fluxcal() const Return true if any flux calibrator observations are available. Definition: ReceptionCalibrator.C:569 unsigned get_nfree() const Alternative ways of ordering Integration instances. Definition: IntegrationOrder.h:29 Telescope pointing parameters recorded during the observation. Definition: Pointing.h:27 virtual void erase(unsigned isubint) Remove the specified sub-integration. Definition: Archive_resize.C:94 FluxCalOff virtual void set_state(Signal::State state)=0 Set the state of the profile data. unsigned nthread void tscrunch(unsigned nscrunch=0) Integrate profiles in time. Definition: Archive_tscrunch.C:17 bool use_colour Use colour in plots. Definition: CalibratorPlotter.h:66 Intermediate storage of MEAL::Complex parameters. Definition: PolnCalibratorExtension.h:135 Estimate< double > get_mean() const Get the weighted mean of the Profile amplitudes. Definition: PhaseWeight.C:334 virtual void setup() Any extra setup before running main loop. Definition: Application.C:248 Generated using doxygen 1.8.17
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