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| FITSArchive () |
| Default constructor.
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| FITSArchive (const FITSArchive &archive) |
| Copy constructor.
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| ~FITSArchive () |
| Destructor.
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const FITSArchive & | operator= (const FITSArchive &archive) |
| Assignment operator.
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| FITSArchive (const Archive &archive) |
| Base copy constructor.
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void | copy (const Archive &archive) |
| Copy all of the class attributes and the selected Integration data. More...
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FITSArchive * | clone () const |
| Return a pointer to a new copy constructed instance equal to this. More...
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void | update_history () |
| Add a new row to the history, reflecting the current state.
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void | unload (fitsfile *, const Pointing *, int row) const |
| Unload Pointing to the specified row of the subint table. More...
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double | get_offs_sub (unsigned int isub) const |
| Get the offs_sub value (only present in fits files)
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void | refmjd_rounding_correction () |
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void | set_search_mode () |
| Indicate the FITSArchive contains search mode data.
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| BasicArchive () |
| null constructor
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| BasicArchive (const BasicArchive &archive) |
| copy constructor
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const BasicArchive & | operator= (const BasicArchive &archive) |
| assignment operator
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| ~BasicArchive () |
| destructor
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virtual std::string | get_telescope () const |
| Get the name of the telescope
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virtual void | set_telescope (const std::string &) |
| Set the name of the telescope
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virtual Signal::State | get_state () const |
| Get the state of the profiles. More...
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virtual void | set_state (Signal::State state) |
| Set the state of the profiles. More...
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virtual Signal::Scale | get_scale () const |
| Get the scale in which flux density is measured. More...
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virtual void | set_scale (Signal::Scale scale) |
| Set the scale in which flux density is measured. More...
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virtual Signal::Source | get_type () const |
| Get the observation type (psr, cal) More...
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virtual void | set_type (Signal::Source type) |
| Set the observation type (psr, cal) More...
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virtual std::string | get_source () const |
| Get the source name.
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virtual void | set_source (const std::string &source) |
| Set the source name.
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virtual sky_coord | get_coordinates () const |
| Get the coordinates of the source.
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virtual void | set_coordinates (const sky_coord &coordinates) |
| Set the coordinates of the source.
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virtual unsigned | get_nbin () const |
| Get the number of pulsar phase bins used. More...
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virtual unsigned | get_nchan () const |
| Get the number of frequency channels used. More...
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virtual unsigned | get_npol () const |
| Get the number of frequency channels used. More...
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virtual unsigned | get_nsubint () const |
| Get the number of sub-integrations stored in the file. More...
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virtual double | get_bandwidth () const |
| Get the overall bandwidth of the observation. More...
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virtual void | set_bandwidth (double bw) |
| Set the overall bandwidth of the observation. More...
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virtual double | get_centre_frequency () const |
| Get the centre frequency of the observation. More...
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virtual void | set_centre_frequency (double cf) |
| Set the centre frequency of the observation.
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virtual double | get_dispersion_measure () const |
| Get the dispersion measure (in ) More...
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virtual void | set_dispersion_measure (double dm) |
| Set the dispersion measure (in ) More...
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virtual bool | get_dedispersed () const |
| Inter-channel dispersion delay has been removed.
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virtual void | set_dedispersed (bool done=true) |
| Set the status of the dispersion delay flag. More...
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virtual double | get_rotation_measure () const |
| Get the rotation measure (in )
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virtual void | set_rotation_measure (double rm) |
| Set the rotation measure (in )
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virtual bool | get_faraday_corrected () const |
| data have been corrected for ISM faraday rotation More...
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virtual void | set_faraday_corrected (bool done=true) |
| Set the status of the ISM RM flag. More...
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virtual bool | get_poln_calibrated () const |
| Data has been poln calibrated.
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virtual void | set_poln_calibrated (bool done=true) |
| Set the status of the poln calibrated flag.
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| Archive () |
| Default constructor.
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| Archive (const Archive &archive) |
| Copy constructor. More...
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virtual | ~Archive () |
| Destructor.
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Archive & | operator= (const Archive &a) |
| Assignment operator. More...
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template<class T > |
const T * | get () const |
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template<class T > |
T * | get () |
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template<class T > |
T * | getadd () |
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void | copy (const Archive &) |
| Copy all base class attributes, Extensions, and Integrations.
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void | copy (const Archive *) |
| Copy all base class attributes, Extensions, and Integrations.
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Archive * | total (bool tscrunch=true) const |
| Return pointer to a new fscrunched, tscrunched and pscrunched clone. More...
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Archive * | tscrunched () const |
| Return pointer to a new tscrunched clone. More...
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Archive * | extract (std::vector< unsigned > &subints) const |
| Return pointer to a new instance with only the specified subints.
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Profile * | get_Profile (unsigned subint, unsigned pol, unsigned chan) |
| Return pointer to the specified profile. More...
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const Profile * | get_Profile (unsigned subint, unsigned pol, unsigned chan) const |
| Return pointer to the specified profile.
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void | set_ephemeris (const Parameters *ephemeris, bool update=true) |
| Install the given ephemeris and call update_model. More...
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const Parameters * | get_ephemeris () const |
| Return a pointer to the current archive ephemeris.
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bool | has_ephemeris () const |
| Return true if the Archive has an ephemeris.
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void | set_model (const Predictor *model, bool apply=true) |
| Install the given predictor and shift profiles to align.
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const Predictor * | get_model () const |
| Return a pointer to the current phase predictor.
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bool | has_model () const |
| Returns true if the Archive has a model.
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void | update_model () |
| Create a new predictor and align the Integrations to the new model. More...
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void | bscrunch (unsigned nscrunch) |
| Integrate pulse profiles in phase. More...
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void | fold (unsigned nfold) |
| Integrate neighbouring sections of the pulse profiles. More...
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void | pscrunch () |
| Integrate profiles in polarization. More...
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void | fscrunch (unsigned nscrunch=0) |
| Integrate profiles in frequency. More...
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void | tscrunch (unsigned nscrunch=0) |
| Integrate profiles in time. More...
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void | rotate (double time) |
| Phase rotate each profile by time seconds.
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void | rotate_phase (double phase) |
| Rotate each profile by phase.
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void | append (const Archive *archive) |
| Append the Integrations from the specifed archive. More...
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void | remove_chan (unsigned first, unsigned last) |
| Delete the specified inclusive channel range from the Archive.
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void | update_centre_frequency () |
| Update the centre frequency.
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void | centre (double phase_offset=0.5) |
| Phase rotate pulsar Integrations so that pulse phase zero is centred. More...
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void | centre_max_bin (double phase_offset=0.5) |
| Phase rotate pulsar Integrations so centre the maximum amplitude. More...
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void | convert_state (Signal::State state) |
| Convert data to the specified state. More...
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Signal::Basis | get_basis () const |
| Convenience interface to Receiver::get_basis.
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void | dedisperse () |
| Rotate the Profiles to remove dispersion delays b/w chans. More...
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void | defaraday () |
| Correct the Faraday rotation of Q into U. More...
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void | transform (const Jones< float > &) |
| Perform the transformation on each polarimetric profile.
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void | transform (const std::vector< Jones< float > > &) |
| Perform frequency response on each polarimetric profile.
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void | transform (const std::vector< std::vector< Jones< float > > > &) |
| Perform the time and frequency response on each polarimetric profile.
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void | invint () |
| Transform Stokes I,Q,U,V into the polarimetric invariant interval.
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PhaseWeight * | baseline () const |
| Return a new PhaseWeight instance with the baseline phase bins masked.
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void | remove_baseline () |
| Remove the baseline from all profiles.
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void | uniform_weight (float new_weight=1.0) |
| Set the weight of each profile to the given number.
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bool | standard_match (const Archive *arch, std::string &reason) const |
| Test if arch matches (enough for a pulsar - standard match)
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bool | calibrator_match (const Archive *arch, std::string &reason) const |
| Test if arch matches (enough for a pulsar - calibrator match)
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bool | processing_match (const Archive *arch, std::string &reason) const |
| Test if arch matches (enough for a pulsar - pulsar match)
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bool | mixable (const Archive *arch, std::string &reason) const |
| Test if arch is mixable (enough for append)
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double | weighted_frequency (unsigned ichan, unsigned start, unsigned end) const |
| Computes the weighted channel frequency over an Integration interval. More...
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void | bscrunch_to_nbin (unsigned new_nbin) |
| Call bscrunch with the appropriate value. More...
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void | fscrunch_to_nchan (unsigned new_nchan) |
| Call fscrunch with the appropriate value. More...
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void | tscrunch_to_nsub (unsigned new_nsub) |
| Call tscrunch with the appropriate value. More...
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MJD | start_time () const |
| Return the MJD at the start of the first sub-integration.
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MJD | end_time () const |
| Return the MJD at the end of the last sub-integration.
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double | integration_length () const |
| Returns the total time integrated into all Integrations (in seconds)
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bool | type_is_cal () const |
| Return true if the observation is a calibrator.
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void | find_transitions (int &hi2lo, int &lo2hi, int &buffer) const |
| Find the transitions between high and low states in total intensity. More...
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void | find_peak_edges (int &rise, int &fall) const |
| Find the bins in which the total intensity exceeds a threshold. More...
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float | find_max_phase () const |
| Returns the centre phase of the region with maximum total intensity. More...
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float | find_min_phase (float dc=0.15) const |
| Returns the centre phase of the region with minimum total intensity. More...
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float | rms_baseline (float dc=0.4) |
| Returns geometric mean of baseline RMS for each Integration. More...
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virtual Interface * | get_interface () |
| Return a text interface that can be used to access this instance.
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void | unload (const char *filename=0) const |
| Write the archive to filename. More...
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void | unload (const std::string &filename) const |
| Convenience interface to Archive::unload (const char*)
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std::string | get_filename () const |
| Get the name of the file to which the archive will be unloaded.
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void | set_filename (const std::string &filename) |
| Set the filename of the Archive. More...
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void | update () |
| Update the current archive, saving current Integration data.
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void | refresh () |
| Completely reload the archive, deleting all data.
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virtual void | resize (unsigned nsubint, unsigned npol=0, unsigned nchan=0, unsigned nbin=0) |
| Resize the Integration vector with new_Integration instances. More...
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virtual void | erase (unsigned isubint) |
| Remove the specified sub-integration.
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void | reverse_chan () |
| Reverse the order of frequency channels.
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virtual unsigned | get_nextension () const |
| Return the number of extensions available.
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virtual const Extension * | get_extension (unsigned iextension) const |
| Return a pointer to the specified extension. More...
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virtual Extension * | get_extension (unsigned iextension) |
| Return a pointer to the specified extension. More...
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template<class ExtensionType > |
const ExtensionType * | get () const |
| Template method searches for an Extension of the specified type.
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template<class ExtensionType > |
ExtensionType * | get () |
| Template method searches for an Extension of the specified type.
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template<class ExtensionType > |
ExtensionType * | getadd () |
| Template method returns an Extension of the specified type.
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virtual void | add_extension (Extension *extension) |
| Add an Extension to the Archive instance. More...
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Expert * | expert () |
| Provide access to the expert interface.
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const Expert * | expert () const |
| The default baseline removal strategy.
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const Match * | get_standard_match () const |
| Policy determines if a standard/template matches an observation.
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void | set_standard_match (Match *) |
| The default baseline removal strategy.
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const Match * | get_calibrator_match () const |
| Policy determines if a calibrator matches an observation.
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void | set_calibrator_match (Match *) |
| The default baseline removal strategy.
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const Match * | get_processing_match () const |
| Policy determines if data were processed identically.
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void | set_processing_match (Match *) |
| The default baseline removal strategy.
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const Match * | get_mixable () const |
| Policy determines if data can be combined/integrated.
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void | set_mixable (Match *) |
| The default baseline removal strategy.
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StrategySet * | get_strategy () const |
| Returns the strategy manager.
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| IntegrationManager () |
| null constructor
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| IntegrationManager (const IntegrationManager &archive) |
| copy constructor
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IntegrationManager & | operator= (const IntegrationManager &archive) |
| operator =
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virtual | ~IntegrationManager () |
| destructor
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Integration * | get_Integration (unsigned subint) |
| Return pointer to the specified Integration. More...
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Integration * | get_last_Integration () |
| Return a pointer to the last Integration.
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Integration * | get_first_Integration () |
| Return a pointer to the first Integration.
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const Integration * | get_Integration (unsigned subint) const |
| Return const pointer to the specified Integration.
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const Integration * | get_last_Integration () const |
| Return a const pointer to the last Integration.
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const Integration * | get_first_Integration () const |
| Return a const pointer to the first Integration.
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template<class StrictWeakOrdering > |
void | sort (StrictWeakOrdering comp=temporal_order) |
| Sort the Integrations according to the specified order.
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void | shuffle () |
| Randomly rearrange the sub-integrations.
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Expert * | expert () |
| Provide access to the expert interface. More...
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| Able (const Able &) |
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Able & | operator= (const Able &) |
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unsigned | get_reference_count () const |
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| HeapTracked (const HeapTracked &) |
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HeapTracked & | operator= (const HeapTracked &) |
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bool | __is_on_heap () const |
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static std::string | get_template_name () |
| Return the name of the PSRFITS definition template file.
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static void | unload (fitsfile *, const FITSHdrExtension *) |
| Unload FITSHdrExtension to the current HDU of the specified FITS file.
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static void | unload (fitsfile *, const ObsExtension *) |
| Unload ObsExtension to the current HDU of the specified FITS file.
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static void | unload (fitsfile *, const Receiver *) |
| Unload Receiver to the current HDU of the specified FITS file.
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static void | unload (fitsfile *, const WidebandCorrelator *) |
| Unload WidebandCorrelator to the current HDU of the specified FITS file.
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static void | unload (fitsfile *, const ITRFExtension *) |
| Unload ITRFExtension to the current HDU of the specified FITS file.
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static void | unload (fitsfile *, const CalInfoExtension *) |
| Unload CalInfoExtension to the current HDU of the specified FITS file.
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static void | unload (fitsfile *, const ProcHistory *) |
| Unload ProcHistory to the HISTORY HDU.
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static void | unload (fitsfile *, const Passband *) |
| Unload Passband to the BANDPASS HDU.
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static void | unload (fitsfile *, const DigitiserStatistics *) |
| Unload DigitiserStatistics to the DIG_STAT HDU.
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static void | unload (fitsfile *, const DigitiserCounts *) |
| Unload DigitiserCounts to DIG_CNTS HDU. More...
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static void | unload (fitsfile *, const PolnCalibratorExtension *) |
| Unload PolnCalibratorExtension to the FEEDPAR HDU.
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static void | unload (fitsfile *, const FluxCalibratorExtension *) |
| Unload FluxCalibratorExtension to the FLUX_CAL HDU.
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static void | unload (fitsfile *, const CalibratorStokes *) |
| Unload CalibratorStokes to the CAL_POLN HDU.
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static void | unload (fitsfile *, const CalibrationInterpolatorExtension *) |
| Unload CalibrationInterpolatorExtension to the PCMINTER HDU.
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static void | unload (fitsfile *, const FITSSUBHdrExtension *) |
| Unload FITSSUBHdrExtension.
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static void | unload (fitsfile *, const CoherentDedispersion *) |
| Unload CoherentDedispersion.
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static void | unload (fitsfile *, const AuxColdPlasmaMeasures *, int row) |
| Unload AuxColdPlasmaMeausres to the specified row of the subint table. More...
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static void | unload (fitsfile *, const ObsDescription *) |
| Unload the observation description.
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static void | unload (fitsfile *, const CrossCovarianceMatrix *) |
| Unload the Cross-Covariance Matrix Data.
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static void | ensure_linkage () |
| Ensure that BasicArchive code is linked. More...
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static Archive * | new_Archive (const std::string &class_name) |
| Factory returns a null-constructed instance of the named class. More...
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static Archive * | load (const std::string &name) |
| Factory returns a new instance loaded from filename.
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static unsigned | get_instance_count () |
| Returns the number of Archive instances currently in existence.
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static void | agent_report () |
| Report on the status of the plugins.
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static void | agent_list () |
| List the successfully loaded plugins.
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static void | set_verbosity (unsigned level) |
| Set the verbosity level (0 to 3)
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static size_t | get_instance_count () |
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static void * | operator new (size_t size, void *ptr=0) |
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static void | operator delete (void *location, void *ptr) |
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static void | operator delete (void *location) |
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static size_t | get_heap_queue_size () |
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virtual void | load_header (const char *filename) |
| Load the FITS header information from filename. More...
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virtual Integration * | load_Integration (const char *filename, unsigned subint) |
| Load the specified Integration from filename, returning new instance. More...
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bool | can_unload () const |
| The unload_file method is implemented.
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virtual void | unload_file (const char *filename) const |
| Unload the FITSArchive (header and Integration data) to filename.
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template<typename T > |
void | load_amps (fitsfile *, Integration *, unsigned isubint, int colnum) |
| Load data of any type.
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void | load_Parameters (fitsfile *) |
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void | unload_Parameters (fitsfile *) const |
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void | load_Predictor (fitsfile *) |
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void | unload_Predictor (fitsfile *) const |
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void | load_ProcHistory (fitsfile *) |
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void | no_ProcHistory (fitsfile *) |
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void | load_DigitiserStatistics (fitsfile *) |
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void | load_DigitiserCounts (fitsfile *) |
| FITSArchive::load_DigitiserCounts Creates a DigitiserCounts extension and loads it from the fits file given. More...
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void | load_Passband (fitsfile *) |
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void | load_PolnCalibratorExtension (fitsfile *) |
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void | load_FluxCalibratorExtension (fitsfile *) |
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void | load_CalibratorStokes (fitsfile *) |
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void | load_CalibrationInterpolatorExtension (fitsfile *) |
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void | load_Receiver (fitsfile *) |
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void | load_ITRFExtension (fitsfile *) |
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void | load_CalInfoExtension (fitsfile *) |
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void | load_WidebandCorrelator (fitsfile *) |
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void | load_FITSSUBHdrExtension (fitsfile *) |
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void | load_CoherentDedispersion (fitsfile *) |
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void | load_ObsDescription (fitsfile *) |
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void | load_CrossCovarianceMatrix (fitsfile *) |
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template<class Ext > |
void | unload (fitsfile *, const char *hdu_name) const |
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void | load_integration_state (fitsfile *) |
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void | load_state (fitsfile *) |
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void | load_Pointing (fitsfile *, int row, Integration *) |
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void | load_Plasma (fitsfile *, int row, Integration *) |
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void | load_SpectralKurtosis (fitsfile *, int row, Integration *) |
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void | interpret_scale () |
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void | interpret_pol_type () |
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void | unload_Integration (fitsfile *, int row, const Integration *) const |
| A function to write an integration to a row in a FITS file on disk.
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void | unload_integrations (fitsfile *) const |
| Unload Integration data to the SUBINT HDU of the specified FITS file.
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void | clean_Pointing_columns (fitsfile *) const |
| Delete Pointing-related columns, if not needed.
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void | add_Pointing_columns (fitsfile *) const |
| Add additional Pointing::Info columns, if needed.
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void | load_Pointing_columns (fitsfile *fptr) |
| Load additional Pointing::Info column information, if any.
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int | get_last_pointing_column (fitsfile *fptr) const |
| Get the column past which to write/read additional Pointing::Info.
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void | unload_sk_integrations (fitsfile *) const |
| Unload Spectral Kurtosis Integration data to the SPECKURT HDU.
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virtual void | set_nbin (unsigned nbin) |
| Set the number of pulsar phase bins used. More...
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virtual void | set_nchan (unsigned nchan) |
| Set the number of frequency channels used. More...
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virtual void | set_npol (unsigned npol) |
| Set the number of frequency channels used. More...
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virtual void | set_nsubint (unsigned nsubint) |
| Set the number of sub-integrations stored in the file. More...
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Integration * | new_Integration (const Integration *copy_this=0) |
| Return a pointer to a new BasicIntegration. More...
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Integration * | use_Integration (Integration *) |
| Return the given Integration ready for use.
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void | init_Integration (Integration *subint, bool check_phase=false) |
| Initialize an Integration to reflect Archive attributes. More...
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void | resize_Integration (Integration *integration) |
| Provide Integration::resize access to Archive-derived classes.
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void | apply_model (Integration *subint, const Predictor *old=0) |
| Apply the current model to the Integration. More...
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void | update_model (unsigned old_nsubint, bool clear_model=false) |
| Update the predictor model and correct the Integration set. More...
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void | update_model (const MJD &time, bool clear_model=false) |
| Update the predictor to include the specifed MJD.
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void | create_updated_model (bool clear_model) |
| Creates polynomials to span the Integration set. More...
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bool | good_model (const Predictor *test_model) const |
| Returns true if the given model spans the Integration set. More...
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bool | zero_phase_aligned () const |
| Return true if all Integration::zero_phase_aligned flags are set.
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virtual void | _resize (unsigned nsubint, bool instances=true) |
| Resize the Integration vector. More...
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void | append (const IntegrationManager *more_subints) |
| Append new_Integration copies of Integration objects to self.
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void | manage (IntegrationManager *more_subints) |
| Append use_Integration modifications of Integration objects to self.
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void | manage (Integration *integration) |
| Directly append the Integration instance (no copy)
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void | insert (unsigned isubint, Integration *integration) |
| Insert the Integration instance into the specified location.
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void | unmanage (const Integration *) |
| Remove the Integration instance.
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void | unmanage (unsigned isubint) |
| Remove the Integration at the specified index.
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void | load_all () |
| Load all sub-integrations.
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Handle * | __reference (bool active) const |
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void | __dereference (bool auto_delete=true) const |
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